Java 类com.google.common.collect.ImmutableSortedSet 实例源码

项目：hashsdn-controller 文件：ConfigurationImplTest.java

@Test
public void testAddMemberReplicaForShard() {
    configuration.addMemberReplicaForShard("people-1", MEMBER_2);
    String shardName = configuration.getShardNameForModule("people");
    assertEquals("ModuleShardName", "people-1", shardName);
    ShardStrategy shardStrategy = configuration.getStrategyForModule("people");
    assertEquals("ModuleStrategy", ModuleShardStrategy.class, shardStrategy.getClass());
    Collection<MemberName> members = configuration.getMembersFromShardName("people-1");
    assertEquals("Members", ImmutableSortedSet.of(MEMBER_1, MEMBER_2),
        ImmutableSortedSet.copyOf(members));

    configuration.addMemberReplicaForShard("non-existent", MEMBER_2);
    Set<String> shardNames = configuration.getAllShardNames();
    assertEquals("ShardNames", ImmutableSortedSet.of("people-1", "cars-1", "test-1", "default"),
        ImmutableSortedSet.copyOf(shardNames));
}

项目：java-monitoring-client-library 文件：FibonacciFitter.java

/**
 * Returns a new {@link CustomFitter} with bounds corresponding to the Fibonacci sequence.
 *
 * @param maxBucketSize the maximum bucket size to create (rounded down to the nearest Fibonacci
 *     number)
 * @throws IllegalArgumentException if {@code maxBucketSize <= 0}
 */
public static CustomFitter create(long maxBucketSize) {
  checkArgument(maxBucketSize > 0, "maxBucketSize must be greater than 0");

  ImmutableSortedSet.Builder<Double> boundaries = ImmutableSortedSet.naturalOrder();
  boundaries.add(Double.valueOf(0));
  long i = 1;
  long j = 2;
  long k = 3;
  while (i <= maxBucketSize) {
    boundaries.add(Double.valueOf(i));
    i = j;
    j = k;
    k = i + j;
  }

  return CustomFitter.create(boundaries.build());
}

项目：java-monitoring-client-library 文件：ExponentialFitter.java

/**
 * Create a new {@link ExponentialFitter}.
 *
 * @param numFiniteIntervals the number of intervals, excluding the underflow and overflow
 *     intervals
 * @param base the base of the exponent
 * @param scale a multiplicative factor for the exponential function
 * @throws IllegalArgumentException if {@code numFiniteIntervals <= 0}, {@code width <= 0} or
 *     {@code base <= 1}
 */
public static ExponentialFitter create(int numFiniteIntervals, double base, double scale) {
  checkArgument(numFiniteIntervals > 0, "numFiniteIntervals must be greater than 0");
  checkArgument(scale != 0, "scale must not be 0");
  checkArgument(base > 1, "base must be greater than 1");
  checkDouble(base);
  checkDouble(scale);

  ImmutableSortedSet.Builder<Double> boundaries = ImmutableSortedSet.naturalOrder();

  for (int i = 0; i < numFiniteIntervals + 1; i++) {
    boundaries.add(scale * Math.pow(base, i));
  }

  return new AutoValue_ExponentialFitter(base, scale, boundaries.build());
}

项目：andbg 文件：ImmutableConverter.java

@Nonnull
public SortedSet<ImmutableItem> toSortedSet(@Nonnull Comparator<? super ImmutableItem> comparator,
                                            @Nullable final SortedSet<? extends Item> sortedSet) {
    if (sortedSet == null || sortedSet.size() == 0) {
        return ImmutableSortedSet.of();
    }

    @SuppressWarnings("unchecked")
    ImmutableItem[] newItems = (ImmutableItem[])new Object[sortedSet.size()];
    int index = 0;
    for (Item item: sortedSet) {
        newItems[index++] = makeImmutable(item);
    }

    return ArraySortedSet.of(comparator, newItems);
}

项目：ontolib 文件：GoOboParserTest.java

@Test
public void testParseHpoHead() throws IOException {
  final GoOboParser parser = new GoOboParser(goHeadFile, true);
  final GoOntology ontology = parser.parse();

  assertEquals(
      "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=1], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=2], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=3]], outEdges=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=1]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=2]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=3]]]}, edgeCount=3]",
      ontology.getGraph().toString());
  assertEquals(
      "[ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000004], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005554], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0007582], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008372]]",
      ImmutableSortedSet.copyOf(ontology.getAllTermIds()).toString());
  assertThat(ImmutableSortedMap.copyOf(ontology.getTermMap()).toString(),
      startsWith("{ImmutableTermId"));
  assertThat(ImmutableSortedMap.copyOf(ontology.getTermMap()).toString(),
      endsWith("description=null, trailingModifiers=null]]]}"));
  assertEquals(
      "{1=GoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=1, relationQualifier=IS_A], 2=GoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=2, relationQualifier=IS_A], 3=GoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=3, relationQualifier=IS_A]}",
      ImmutableSortedMap.copyOf(ontology.getRelationMap()).toString());
  assertEquals("ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000]",
      ontology.getRootTermId().toString());
  assertEquals(
      "{data-version=releases/2017-06-16, remark=Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/never_in_taxon.owl>))) [Axioms: 18 Logical Axioms: 0]}",
      ontology.getMetaInfo().toString());
}

项目：ontolib 文件：HpoOboParserTest.java

@Test
public void testParseHpoHead() throws IOException {
  final HpoOboParser parser = new HpoOboParser(hpoHeadFile, true);
  final HpoOntology ontology = parser.parse();

  assertEquals(
      "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=1], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=4]], outEdges=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=2], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=3]], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=1]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=2]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=3]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=4]]]}, edgeCount=4]",
      ontology.getGraph().toString());
  assertEquals(
      "[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]]",
      ImmutableSortedSet.copyOf(ontology.getAllTermIds()).toString());
  assertEquals(
      "{ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], altTermIds=[], name=All, definition=null, comment=Root of all terms in the Human Phenotype Ontology., subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=UMLS:C0444868, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461]], name=Mode of inheritance, definition=The pattern in which a particular genetic trait or disorder is passed from one generation to the next., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Inheritance, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=UMLS:C1708511, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=SNOMEDCT_US:263681008, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C0443147, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]], name=Autosomal recessive inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal recessive, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal recessive form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal recessive predisposition, scope=RELATED, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=SNOMEDCT_US:258211005, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C0441748, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C4020899, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], altTermIds=[], name=Phenotypic abnormality, definition=A phenotypic abnormality., comment=This is the root of the phenotypic abnormality subontology of the HPO., subsets=[], synonyms=[ImmutableTermSynonym [value=Organ abnormality, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=UMLS:C4021819, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=SNOMEDCT_US:263681008, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C0443147, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]], name=Autosomal recessive inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal recessive, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal recessive form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal recessive predisposition, scope=RELATED, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=SNOMEDCT_US:258211005, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C0441748, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C4020899, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=SNOMEDCT_US:263681008, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C0443147, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=SNOMEDCT_US:263681008, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C0443147, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=SNOMEDCT_US:263681008, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C0443147, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461]], name=Mode of inheritance, definition=The pattern in which a particular genetic trait or disorder is passed from one generation to the next., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Inheritance, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=UMLS:C1708511, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=SNOMEDCT_US:263681008, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C0443147, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=SNOMEDCT_US:263681008, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C0443147, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461]], name=Mode of inheritance, definition=The pattern in which a particular genetic trait or disorder is passed from one generation to the next., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Inheritance, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=UMLS:C1708511, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=SNOMEDCT_US:263681008, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C0443147, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]], name=Autosomal recessive inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal recessive, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal recessive form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal recessive predisposition, scope=RELATED, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=SNOMEDCT_US:258211005, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C0441748, description=null, trailingModifiers=null], ImmutableDbxref [name=UMLS:C4020899, description=null, trailingModifiers=null]]]}",
      ImmutableSortedMap.copyOf(ontology.getTermMap()).toString());
  assertEquals(
      "{1=HpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=1, relationQualifier=IS_A], 2=HpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=2, relationQualifier=IS_A], 3=HpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=3, relationQualifier=IS_A], 4=HpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=4, relationQualifier=IS_A]}",
      ImmutableSortedMap.copyOf(ontology.getRelationMap()).toString());
  assertEquals("ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]",
      ontology.getRootTermId().toString());
  assertEquals(
      "{data-version=releases/2017-04-13, saved-by=Peter Robinson, Sebastian Koehler, Sandra Doelken, Chris Mungall, Melissa Haendel, Nicole Vasilevsky, Monarch Initiative, et al.}",
      ontology.getMetaInfo().toString());
}

项目：ontolib 文件：MpoOboParserTest.java

@Test
public void testParseHpoHead() throws IOException {
  final MpoOboParser parser = new MpoOboParser(mpoHeadFile, true);
  final MpoOntology ontology = parser.parse();

  assertEquals(
      "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], id=1]], outEdges=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], id=2], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], id=3]], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], id=1]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], id=2]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], id=3]]]}, edgeCount=3]",
      ontology.getGraph().toString());
  assertEquals(
      "[ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000368], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075]]",
      ImmutableSortedSet.copyOf(ontology.getAllTermIds()).toString());
  assertEquals(
      "{ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001]=MPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], altTermIds=[], name=mammalian phenotype, definition=the observable morphological, physiological, behavioral and other characteristics of mammalian organisms that are manifested through development and lifespan, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null, xrefs=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000368]=MPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000368]], name=abnormal coat/hair pigmentation, definition=irregular or unusual pigmentation of the hair, comment=null, subsets=[Europhenome_Terms, IMPC, Sanger_Terms], synonyms=[ImmutableTermSynonym [value=abnormal coat color, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=abnormal hair pigmentation, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=coat: color anomalies, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=MGI:2173541, description=null, trailingModifiers=null]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186]=MPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], altTermIds=[], name=pigmentation phenotype, definition=null, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null, xrefs=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188]=MPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188], altTermIds=[], name=hyperpigmentation, definition=excess of pigment in any or all tissues or a part of a tissue, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null, xrefs=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075]=MPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000368]], name=abnormal coat/hair pigmentation, definition=irregular or unusual pigmentation of the hair, comment=null, subsets=[Europhenome_Terms, IMPC, Sanger_Terms], synonyms=[ImmutableTermSynonym [value=abnormal coat color, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=abnormal hair pigmentation, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=coat: color anomalies, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null, xrefs=[ImmutableDbxref [name=MGI:2173541, description=null, trailingModifiers=null]]]}",
      ImmutableSortedMap.copyOf(ontology.getTermMap()).toString());
  assertEquals(
      "{1=MpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], id=1, relationQualifier=IS_A], 2=MpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001188], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], id=2, relationQualifier=IS_A], 3=MpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0002075], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], id=3, relationQualifier=IS_A]}",
      ImmutableSortedMap.copyOf(ontology.getRelationMap()).toString());
  assertEquals("ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001]",
      ontology.getRootTermId().toString());
  assertEquals("{data-version=releases/2017-06-05}", ontology.getMetaInfo().toString());
}

项目：ontolib 文件：UberphenoOboParserTest.java

@Test
public void testParseUberphenoHead() throws IOException {
  final UberphenoOboParser parser = new UberphenoOboParser(uberphenoHeadFile, true);
  final UberphenoOntology ontology = parser.parse();

  assertEquals(
      "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=2]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], id=4]], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=1]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], id=4]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=2], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=1], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=3]], outEdges=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=3]]]}, edgeCount=4]",
      ontology.getGraph().toString());
  assertEquals(
      "[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001]]",
      ImmutableSortedSet.copyOf(ontology.getAllTermIds()).toString());
  assertEquals(
      "{ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=UberphenoTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], altTermIds=[], name=All, definition=null, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null, xrefs=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001]=UberphenoTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], altTermIds=[], name=mammalian phenotype, definition=null, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null, xrefs=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186]=UberphenoTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], altTermIds=[], name=pigmentation phenotype, definition=null, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null, xrefs=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001]=UberphenoTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], altTermIds=[], name=UBERPHENO_ROOT, definition=null, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null, xrefs=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001]=UberphenoTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001], altTermIds=[], name=abnormal(ly) quality zebrafish anatomical entity, definition=null, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null, xrefs=[]]}",
      ImmutableSortedMap.copyOf(ontology.getTermMap()).toString());
  assertEquals(
      "{1=UberphenoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=1, relationQualifier=IS_A], 2=UberphenoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=2, relationQualifier=IS_A], 3=UberphenoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=3, relationQualifier=IS_A], 4=UberphenoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], id=4, relationQualifier=IS_A]}",
      ImmutableSortedMap.copyOf(ontology.getRelationMap()).toString());
  assertEquals("ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001]",
      ontology.getRootTermId().toString());
  assertEquals("{date=20:01:2012 06:00}", ontology.getMetaInfo().toString());
}

项目：hashsdn-controller 文件：ConfigurationImplTest.java

@Test
public void testRemoveMemberReplicaForShard() {
    configuration.removeMemberReplicaForShard("default", MEMBER_2);
    String shardName = configuration.getShardNameForModule("default");
    assertEquals("ModuleShardName", "default", shardName);
    ShardStrategy shardStrategy = configuration.getStrategyForModule("default");
    assertNull("ModuleStrategy", shardStrategy);
    Collection<MemberName> members = configuration.getMembersFromShardName("default");
    assertEquals("Members", ImmutableSortedSet.of(MEMBER_1, MEMBER_3),
        ImmutableSortedSet.copyOf(members));

    configuration.removeMemberReplicaForShard("non-existent", MEMBER_2);
    Set<String> shardNames = configuration.getAllShardNames();
    assertEquals("ShardNames", ImmutableSortedSet.of("people-1", "cars-1", "test-1", "default"),
        ImmutableSortedSet.copyOf(shardNames));
}

项目：apollo-custom 文件：PropertySourcesProcessor.java

protected void initializePropertySources() {
  if (environment.getPropertySources().contains(APOLLO_PROPERTY_SOURCE_NAME)) {
    //already initialized
    return;
  }
  CompositePropertySource composite = new CompositePropertySource(APOLLO_PROPERTY_SOURCE_NAME);

  //sort by order asc
  ImmutableSortedSet<Integer> orders = ImmutableSortedSet.copyOf(NAMESPACE_NAMES.keySet());
  Iterator<Integer> iterator = orders.iterator();

  while (iterator.hasNext()) {
    int order = iterator.next();
    for (String namespace : NAMESPACE_NAMES.get(order)) {
      Config config = ConfigService.getConfig(namespace);

      composite.addPropertySource(new ConfigPropertySource(namespace, config));
    }
  }
  environment.getPropertySources().addFirst(composite);
}

项目：ProjectAres 文件：MapCommands.java

@Command(
    aliases = {"maplist", "maps", "ml"},
    desc = "Shows the maps that are currently loaded",
    usage = "[page]",
    min = 0,
    max = 1,
    help = "Shows all the maps that are currently loaded including ones that are not in the rotation."
)
@CommandPermissions("pgm.maplist")
public static void maplist(CommandContext args, final CommandSender sender) throws CommandException {
    final Set<PGMMap> maps = ImmutableSortedSet.copyOf(new PGMMap.DisplayOrder(), PGM.getMatchManager().getMaps());

    new PrettyPaginatedResult<PGMMap>(PGMTranslations.get().t("command.map.mapList.title", sender)) {
        @Override public String format(PGMMap map, int index) {
            return (index + 1) + ". " + map.getInfo().getShortDescription(sender);
        }
    }.display(new BukkitWrappedCommandSender(sender), maps, args.getInteger(0, 1) /* page */);
}

项目：NullAway 文件：NullAwayNativeModels.java

static void guavaStuff() {
  Collection<String> c = null;
  Object o = null;
  // BUG: Diagnostic contains: passing @Nullable parameter 'c' where @NonNull is required
  ImmutableList.builder().addAll(c).build();
  // BUG: Diagnostic contains: passing @Nullable parameter 'o' where @NonNull is required
  ImmutableList.builder().add(o).build();
  // BUG: Diagnostic contains: passing @Nullable parameter 'c' where @NonNull is required
  ImmutableSet.builder().addAll(c).build();
  // BUG: Diagnostic contains: passing @Nullable parameter 'o' where @NonNull is required
  ImmutableSet.builder().add(o).build();
  // BUG: Diagnostic contains: passing @Nullable parameter 'c' where @NonNull is required
  ImmutableSortedSet.builder().addAll(c).build();
  // BUG: Diagnostic contains: passing @Nullable parameter 'o' where @NonNull is required
  ImmutableSortedSet.builder().add(o).build();
  // BUG: Diagnostic contains: passing @Nullable parameter 'c' where @NonNull is required
  Iterables.getFirst(c, "hi");
}

项目：javaide 文件：ImportOrderer.java

private String reorderedImportsString(ImmutableSortedSet<Import> imports) {
    assert !imports.isEmpty();

    Import firstImport = imports.iterator().next();

    // Pretend that the first import was preceded by another import of the same kind
    // (static or non-static), so we don't insert a newline there.
    boolean lastWasStatic = firstImport.isStatic;

    StringBuilder sb = new StringBuilder();
    for (Import thisImport : imports) {
        if (lastWasStatic && !thisImport.isStatic) {
            // Blank line between static and non-static imports.
            sb.append(lineSeparator);
        }
        lastWasStatic = thisImport.isStatic;
        sb.append(thisImport);
    }
    return sb.toString();
}

项目：Elasticsearch 文件：ParentChildIndexFieldData.java

public ParentChildIndexFieldData(Index index, Settings indexSettings, MappedFieldType.Names fieldNames,
                                 FieldDataType fieldDataType, IndexFieldDataCache cache, MapperService mapperService,
                                 CircuitBreakerService breakerService) {
    super(index, indexSettings, fieldNames, fieldDataType, cache);
    this.breakerService = breakerService;
    if (Version.indexCreated(indexSettings).before(Version.V_2_0_0_beta1)) {
        parentTypes = new TreeSet<>();
        for (DocumentMapper documentMapper : mapperService.docMappers(false)) {
            beforeCreate(documentMapper);
        }
        mapperService.addTypeListener(this);
    } else {
        ImmutableSortedSet.Builder<String> builder = ImmutableSortedSet.naturalOrder();
        for (DocumentMapper mapper : mapperService.docMappers(false)) {
            ParentFieldMapper parentFieldMapper = mapper.parentFieldMapper();
            if (parentFieldMapper.active()) {
                builder.add(parentFieldMapper.type());
            }
        }
        parentTypes = builder.build();
    }
}

项目：boqa 文件：GoOboParserTest.java

@Test
public void testParseHpoHead() throws IOException {
  final GoOboParser parser = new GoOboParser(goHeadFile, true);
  final GoOntology ontology = parser.parse();

  assertEquals(
      "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=1], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=2], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=3]], outEdges=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=1]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=2]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=3]]]}, edgeCount=3]",
      ontology.getGraph().toString());
  assertEquals(
      "[ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000004], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005554], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0007582], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150], ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008372]]",
      ImmutableSortedSet.copyOf(ontology.getAllTermIds()).toString());
  assertThat(ImmutableSortedMap.copyOf(ontology.getTermMap()).toString(),
      startsWith("{ImmutableTermId"));
  assertThat(ImmutableSortedMap.copyOf(ontology.getTermMap()).toString(),
      endsWith("createdBy=null, creationDate=null]}"));
  assertEquals(
      "{1=GoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0003674], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=1, relationQualifier=IS_A], 2=GoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0005575], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=2, relationQualifier=IS_A], 3=GoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0008150], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000], id=3, relationQualifier=IS_A]}",
      ImmutableSortedMap.copyOf(ontology.getRelationMap()).toString());
  assertEquals("ImmutableTermId [prefix=ImmutableTermPrefix [value=GO], id=0000000]",
      ontology.getRootTermId().toString());
  assertEquals(
      "{data-version=releases/2017-06-16, remark=Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/go/never_in_taxon.owl>))) [Axioms: 18 Logical Axioms: 0]}",
      ontology.getMetaInfo().toString());
}

项目：boqa 文件：HpoOboParserTest.java

@Test
public void testParseHpoHead() throws IOException {
  final HpoOboParser parser = new HpoOboParser(hpoHeadFile, true);
  final HpoOntology ontology = parser.parse();

  assertEquals(
      "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=1], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=4]], outEdges=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=2], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=3]], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=1]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=2]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=3]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=4]]]}, edgeCount=4]",
      ontology.getGraph().toString());
  assertEquals(
      "[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]]",
      ImmutableSortedSet.copyOf(ontology.getAllTermIds()).toString());
  assertEquals(
      "{ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], altTermIds=[], name=All, definition=null, comment=Root of all terms in the Human Phenotype Ontology., subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461]], name=Mode of inheritance, definition=The pattern in which a particular genetic trait or disorder is passed from one generation to the next., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Inheritance, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]], name=Autosomal recessive inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal recessive, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal recessive form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal recessive predisposition, scope=RELATED, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], altTermIds=[], name=Phenotypic abnormality, definition=A phenotypic abnormality., comment=This is the root of the phenotypic abnormality subontology of the HPO., subsets=[], synonyms=[ImmutableTermSynonym [value=Organ abnormality, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]], name=Autosomal recessive inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal recessive, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal recessive form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal recessive predisposition, scope=RELATED, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461]], name=Mode of inheritance, definition=The pattern in which a particular genetic trait or disorder is passed from one generation to the next., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Inheritance, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001453], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001461]], name=Mode of inheritance, definition=The pattern in which a particular genetic trait or disorder is passed from one generation to the next., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Inheritance, scope=EXACT, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001415], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001447], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001448], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001451], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001455], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001456], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001463]], name=Autosomal dominant inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal dominant, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal dominant form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal dominant type, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]]], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]=HPOTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], altTermIds=[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001416], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0001526]], name=Autosomal recessive inheritance, definition=A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)., comment=null, subsets=[], synonyms=[ImmutableTermSynonym [value=Autosomal recessive, scope=EXACT, synonymTypeName=null, termXrefs=[]], ImmutableTermSynonym [value=Autosomal recessive form, scope=RELATED, synonymTypeName=null, termXrefs=[ImmutableTermXref [id=null, description=null]]], ImmutableTermSynonym [value=Autosomal recessive predisposition, scope=RELATED, synonymTypeName=null, termXrefs=[]]], obsolete=false, createdBy=null, creationDate=null]}",
      ImmutableSortedMap.copyOf(ontology.getTermMap()).toString());
  assertEquals(
      "{1=HpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=1, relationQualifier=IS_A], 2=HpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000006], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=2, relationQualifier=IS_A], 3=HpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000007], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005], id=3, relationQualifier=IS_A], 4=HpoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000118], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], id=4, relationQualifier=IS_A]}",
      ImmutableSortedMap.copyOf(ontology.getRelationMap()).toString());
  assertEquals("ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]",
      ontology.getRootTermId().toString());
  assertEquals(
      "{data-version=releases/2017-04-13, saved-by=Peter Robinson, Sebastian Koehler, Sandra Doelken, Chris Mungall, Melissa Haendel, Nicole Vasilevsky, Monarch Initiative, et al.}",
      ontology.getMetaInfo().toString());
}

项目：PACE 文件：FieldEncryptorConfigTest.java

@Test
public void readTest() throws IOException {
  FieldEncryptorConfig expectedConfig = new FieldEncryptorConfigBuilder().setValueEncryptor(ValueEncryptor.AES_CBC).setProvider("SunJCE").setKeyLength(24)
      .setEncryptUsingVisibility(false).setKeyId("keyId").setDestination(EntryField.COLUMN_FAMILY)
      .setSources(ImmutableSortedSet.of(EntryField.ROW, EntryField.COLUMN_QUALIFIER, EntryField.COLUMN_FAMILY)).build();
  FieldEncryptorConfig actualConfig = new FieldEncryptorConfigBuilder().readFromIni(getIni("config1.ini").get(EntryField.COLUMN_FAMILY.toString())).build();
  assertThat("reading the ini file produces the correct configuration", actualConfig, hasSameFieldsAs(expectedConfig));

  expectedConfig = new FieldEncryptorConfigBuilder().setValueEncryptor(ValueEncryptor.AES_CBC).setProvider("BC").setKeyLength(16)
      .setEncryptUsingVisibility(true).setKeyId("AES_CBC").setDestination(EntryField.ROW).setSources(ImmutableSortedSet.of(EntryField.ROW)).build();
  actualConfig = new FieldEncryptorConfigBuilder().readFromIni(getIni("config2.ini").get(EntryField.ROW.toString())).build();
  assertThat("reading the ini file produces the correct configuration", actualConfig, hasSameFieldsAs(expectedConfig));

  expectedConfig = new FieldEncryptorConfigBuilder().setValueEncryptor(ValueEncryptor.AES_CBC).setKeyLength(16).setEncryptUsingVisibility(true)
      .setKeyId("AES_CBC").setDestination(EntryField.ROW).setSources(ImmutableSortedSet.of(EntryField.ROW)).build();
  actualConfig = new FieldEncryptorConfigBuilder().readFromIni(getIni("config2WithoutDefaults.ini").get(EntryField.ROW.toString())).build();
  assertThat("default values are correctly set", actualConfig, hasSameFieldsAs(expectedConfig));

  expectedConfig = new FieldEncryptorConfigBuilder().setValueEncryptor(ValueEncryptor.AES_CBC).setProvider(null).setKeyLength(16)
      .setEncryptUsingVisibility(false).setKeyId(ValueEncryptor.AES_CBC.toString()).setDestination(EntryField.VALUE)
      .setSources(ImmutableSortedSet.of(EntryField.VALUE)).build();
  actualConfig = new FieldEncryptorConfigBuilder().readFromIni(getIni("config3.ini").get(EntryField.VALUE.toString())).build();
  assertThat("reading the ini file produces the correct configuration", actualConfig, hasSameFieldsAs(expectedConfig));
}

项目：boqa 文件：UberphenoOboParserTest.java

@Test
public void testParseUberphenoHead() throws IOException {
  final UberphenoOboParser parser = new UberphenoOboParser(uberphenoHeadFile, true);
  final UberphenoOntology ontology = parser.parse();

  assertEquals(
      "ImmutableDirectedGraph [edgeLists={ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=2]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], id=4]], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=1]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], id=4]]], ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001]=ImmutableVertexEdgeList [inEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=2], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=1], ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=3]], outEdges=[]], ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001]=ImmutableVertexEdgeList [inEdges=[], outEdges=[ImmutableEdge [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=3]]]}, edgeCount=4]",
      ontology.getGraph().toString());
  assertEquals(
      "[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001]]",
      ImmutableSortedSet.copyOf(ontology.getAllTermIds()).toString());
  assertEquals(
      "{ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001]=UberphenoTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], altTermIds=[], name=All, definition=null, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001]=UberphenoTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], altTermIds=[], name=mammalian phenotype, definition=null, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186]=UberphenoTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], altTermIds=[], name=pigmentation phenotype, definition=null, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001]=UberphenoTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], altTermIds=[], name=UBERPHENO_ROOT, definition=null, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null], ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001]=UberphenoTerm [id=ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001], altTermIds=[], name=abnormal(ly) quality zebrafish anatomical entity, definition=null, comment=null, subsets=[], synonyms=[], obsolete=false, createdBy=null, creationDate=null]}",
      ImmutableSortedMap.copyOf(ontology.getTermMap()).toString());
  assertEquals(
      "{1=UberphenoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=1, relationQualifier=IS_A], 2=UberphenoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=2, relationQualifier=IS_A], 3=UberphenoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=ZP], id=0000001], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001], id=3, relationQualifier=IS_A], 4=UberphenoTermRelation [source=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0001186], dest=ImmutableTermId [prefix=ImmutableTermPrefix [value=MP], id=0000001], id=4, relationQualifier=IS_A]}",
      ImmutableSortedMap.copyOf(ontology.getRelationMap()).toString());
  assertEquals("ImmutableTermId [prefix=ImmutableTermPrefix [value=UBERPHENO], id=00000001]",
      ontology.getRootTermId().toString());
  assertEquals("{date=20:01:2012 06:00}", ontology.getMetaInfo().toString());
}

项目：googles-monorepo-demo 文件：NullPointerTesterTest.java

final void check() {
  runTester().assertNonNullValues(
      Gender.MALE,
      Integer.valueOf(0), 0,
      "", "",
      ImmutableList.of(), ImmutableList.of(),
      ImmutableMap.of(), ImmutableMap.of(),
      ImmutableSet.of(), ImmutableSet.of(),
      ImmutableSortedSet.of(), ImmutableSortedSet.of(),
      ImmutableMultiset.of(), ImmutableMultiset.of(),
      ImmutableMultimap.of(), ImmutableMultimap.of(),
      ImmutableTable.of(), ImmutableTable.of());
}

项目：Reer 文件：BaseInstanceFactory.java

@Override
public Set<ModelType<? extends PUBLIC>> getSupportedTypes() {
    ImmutableSortedSet.Builder<ModelType<? extends PUBLIC>> supportedTypes = ImmutableSortedSet.orderedBy(ModelTypes.<PUBLIC>displayOrder());
    for (TypeRegistration<?> registration : registrations.values()) {
        if (registration.isConstructible()) {
            supportedTypes.add(registration.publicType);
        }
    }
    return supportedTypes.build();
}

项目：Reer 文件：StructSchemaExtractionStrategySupport.java

private static String propertyDescription(ModelSchemaExtractionContext<?> parentContext, ModelProperty<?> property) {
    if (property.getDeclaredBy().size() == 1 && property.getDeclaredBy().contains(parentContext.getType())) {
        return String.format("property '%s'", property.getName());
    } else {
        ImmutableSortedSet<String> declaredBy = ImmutableSortedSet.copyOf(Iterables.transform(property.getDeclaredBy(), Functions.toStringFunction()));
        return String.format("property '%s' declared by %s", property.getName(), Joiner.on(", ").join(declaredBy));
    }
}

项目：Reer 文件：ModelPropertyExtractionContext.java

public Set<ModelType<?>> getDeclaredBy() {
    ImmutableSortedSet.Builder<ModelType<?>> declaredBy = new ImmutableSortedSet.Builder<ModelType<?>>(Ordering.usingToString());
    for (PropertyAccessorExtractionContext accessor : accessors.values()) {
        for (Method method : accessor.getDeclaringMethods()) {
            declaredBy.add(ModelType.declaringType(method));
        }
    }
    return declaredBy.build();
}

项目：andbg 文件：CollectionUtils.java

@Nonnull
private static <T> SortedSet<? extends T> toNaturalSortedSet(@Nonnull Collection<? extends T> collection) {
    if (isNaturalSortedSet(collection)) {
        return (SortedSet<? extends T>)collection;
    }
    return ImmutableSortedSet.copyOf(collection);
}

项目：Reer 文件：DefaultNodeInitializerRegistry.java

private ModelTypeInitializationException canNotConstructTypeException(NodeInitializerContext<?> context) {
    ImmutableSortedSet.Builder<ModelType<?>> constructibleTypes = ImmutableSortedSet.orderedBy(ModelTypes.displayOrder());
    for (NodeInitializerExtractionStrategy extractor : additionalStrategies) {
        for (ModelType<?> constructibleType : extractor.supportedTypes()) {
            if (context.getConstraints().isSatisfiedBy(constructibleType)) {
                constructibleTypes.add(constructibleType);
            }
        }
    }
    return new ModelTypeInitializationException(context, schemaStore, ScalarTypes.TYPES, constructibleTypes.build());
}

项目：Reer 文件：DefaultTaskClassValidatorExtractor.java

@Override
public TaskClassValidator extractValidator(Class<? extends Task> type) {
    ImmutableSet.Builder<TaskPropertyInfo> validatedPropertiesBuilder = ImmutableSet.builder();
    ImmutableSet.Builder<String> nonAnnotatedPropertiesBuilder = ImmutableSortedSet.naturalOrder();
    Queue<TypeEntry> queue = new ArrayDeque<TypeEntry>();
    queue.add(new TypeEntry(null, type));
    while (!queue.isEmpty()) {
        TypeEntry entry = queue.remove();
        parseProperties(entry.parent, entry.type, validatedPropertiesBuilder, nonAnnotatedPropertiesBuilder, queue);
    }
    return new TaskClassValidator(validatedPropertiesBuilder.build(), nonAnnotatedPropertiesBuilder.build());
}

项目：Reer 文件：TaskPropertyUtils.java

public static <T extends TaskFilePropertySpec> SortedSet<T> collectFileProperties(String displayName, Iterator<? extends T> fileProperties) {
    Set<String> names = Sets.newHashSet();
    ImmutableSortedSet.Builder<T> builder = ImmutableSortedSet.naturalOrder();
    while (fileProperties.hasNext()) {
        T propertySpec = fileProperties.next();
        String propertyName = propertySpec.getPropertyName();
        if (!names.add(propertyName)) {
            throw new IllegalArgumentException(String.format("Multiple %s file properties with name '%s'", displayName, propertyName));
        }
        builder.add(propertySpec);
    }
    return builder.build();
}

项目：googles-monorepo-demo 文件：SetGenerators.java

@Override
protected List<String> create(String[] elements) {
  Comparator<String> comparator = createExplicitComparator(elements);
  ImmutableSortedSet.Builder<String> builder = ImmutableSortedSet.orderedBy(comparator);
  builder.add(BEFORE_FIRST);
  builder.add(BEFORE_FIRST_2);
  builder.add(elements);
  builder.add(AFTER_LAST);
  builder.add(AFTER_LAST_2);
  return builder
      .build()
      .subSet(BEFORE_FIRST_2, AFTER_LAST_2)
      .asList()
      .subList(1, elements.length + 1);
}

项目：googles-monorepo-demo 文件：NullPointerTesterTest.java

@SuppressWarnings("unused") // called by NullPointerTester
public void checkDefaultValuesForTheseTypes(
    Gender gender,
    Integer integer, int i,
    String string, CharSequence charSequence,
    List<String> list,
    ImmutableList<Integer> immutableList,
    Map<String, Integer> map,
    ImmutableMap<String, String> immutableMap,
    Set<String> set,
    ImmutableSet<Integer> immutableSet,
    SortedSet<Number> sortedSet,
    ImmutableSortedSet<Number> immutableSortedSet,
    Multiset<String> multiset,
    ImmutableMultiset<Integer> immutableMultiset,
    Multimap<String, Integer> multimap,
    ImmutableMultimap<String, Integer> immutableMultimap,
    Table<String, Integer, Exception> table,
    ImmutableTable<Integer, String, Exception> immutableTable) {
  calledWith(
      gender,
      integer, i,
      string, charSequence,
      list, immutableList,
      map, immutableMap,
      set, immutableSet,
      sortedSet, immutableSortedSet,
      multiset, immutableMultiset,
      multimap, immutableMultimap,
      table, immutableTable);
}

项目：GitHub 文件：DefaultTest.java

@Test
public void defArray() {
  ImmutableDefaultArray a1 = ImmutableDefaultArray.builder().build();
  int[] array = a1.prop();
  int[] nextArray = a1.prop();
  check(array != nextArray);
  check(a1.ints() instanceof ImmutableSortedSet);
}

项目：java-monitoring-client-library 文件：LinearFitter.java

/**
 * Create a new {@link LinearFitter}.
 *
 * @param numFiniteIntervals the number of intervals, excluding the underflow and overflow
 *     intervals
 * @param width the width of each interval
 * @param offset the start value of the first interval
 * @throws IllegalArgumentException if {@code numFiniteIntervals <= 0} or {@code width <= 0}
 */
public static LinearFitter create(int numFiniteIntervals, double width, double offset) {
  checkArgument(numFiniteIntervals > 0, "numFiniteIntervals must be greater than 0");
  checkArgument(width > 0, "width must be greater than 0");
  checkDouble(offset);

  ImmutableSortedSet.Builder<Double> boundaries = ImmutableSortedSet.naturalOrder();

  for (int i = 0; i < numFiniteIntervals + 1; i++) {
    boundaries.add(width * i + offset);
  }

  return new AutoValue_LinearFitter(width, offset, boundaries.build());
}

项目：andbg 文件：ImmutableConverter.java

@Nonnull
public ImmutableSortedSet<ImmutableItem> toSortedSet(@Nonnull Comparator<? super ImmutableItem> comparator,
                                                     @Nullable final Iterable<? extends Item> iterable) {
    if (iterable == null) {
        return ImmutableSortedSet.of();
    }

    boolean needsCopy = false;
    if (iterable instanceof ImmutableSortedSet &&
            ((ImmutableSortedSet)iterable).comparator().equals(comparator)) {
        for (Item element: iterable) {
            if (!isImmutable(element)) {
                needsCopy = true;
                break;
            }
        }
    } else {
        needsCopy = true;
    }

    if (!needsCopy) {
        return (ImmutableSortedSet<ImmutableItem>)iterable;
    }

    final Iterator<? extends Item> iter = iterable.iterator();


    return ImmutableSortedSet.copyOf(comparator, new Iterator<ImmutableItem>() {
        @Override public boolean hasNext() { return iter.hasNext(); }
        @Override public ImmutableItem next() { return makeImmutable(iter.next()); }
        @Override public void remove() { iter.remove(); }
    });
}

项目：googles-monorepo-demo 文件：SetGenerators.java

@Override
protected List<String> create(String[] elements) {
  Comparator<String> comparator = createExplicitComparator(elements).reverse();
  return ImmutableSortedSet.orderedBy(comparator)
      .add(elements)
      .build()
      .descendingSet()
      .asList();
}

项目：helper 文件：ImmutableCollectors.java

public static <E> Collector<E, ?, ImmutableSortedSet<E>> toSortedSet(Comparator<? super E> comparator) {
    return Collector.of(
            () -> new ImmutableSortedSet.Builder<E>(comparator),
            ImmutableSortedSet.Builder::add,
            (l, r) -> l.addAll(r.build()),
            ImmutableSortedSet.Builder::build
    );
}

项目：andbg 文件：CollectionUtils.java

@Nonnull
private static <T> SortedSet<? extends T> toSortedSet(@Nonnull Comparator<? super T> elementComparator,
                                                      @Nonnull Collection<? extends T> collection) {
    if (collection instanceof SortedSet) {
        SortedSet<? extends T> sortedSet = (SortedSet<? extends T>)collection;
        Comparator<?> comparator = sortedSet.comparator();
        if (comparator != null && comparator.equals(elementComparator)) {
            return sortedSet;
        }
    }
    return ImmutableSortedSet.copyOf(elementComparator, collection);
}

项目：r8 文件：Enqueuer.java

private <T extends PresortedComparable<T>> SortedSet<T> toDescriptorSet(
    Set<? extends KeyedDexItem<T>> set) {
  ImmutableSortedSet.Builder<T> builder =
      new ImmutableSortedSet.Builder<>(PresortedComparable::slowCompareTo);
  for (KeyedDexItem<T> item : set) {
    builder.add(item.getKey());
  }
  return builder.build();
}

项目：r8 文件：Enqueuer.java

private static <T extends PresortedComparable<T>> ImmutableSortedSet<T> rewriteItems(
    Set<T> original, BiFunction<T, DexEncodedMethod, T> rewrite) {
  ImmutableSortedSet.Builder<T> builder =
      new ImmutableSortedSet.Builder<>(PresortedComparable::slowCompare);
  for (T item : original) {
    builder.add(rewrite.apply(item, null));
  }
  return builder.build();
}

项目：tac-kbp-eal 文件：SingleFileQueryAssessmentsLoader.java

public final CorpusQueryAssessments loadFrom(final CharSource source) throws IOException {
  final List<String> lines = source.readLines();
  final List<QueryResponse2016> queries = Lists.newArrayList();
  final Map<QueryResponse2016, String> metadata = Maps.newHashMap();
  final ImmutableMultimap.Builder<QueryResponse2016, Symbol> responsesToSystems =
      ImmutableMultimap.builder();
  final Map<QueryResponse2016, QueryAssessment2016> assessments = Maps.newHashMap();
  Optional<String> lastMetadata = Optional.absent();
  for (final String line : lines) {
    if (line.startsWith("#")) {
      lastMetadata = Optional.of(line.trim().substring(1));
    } else {
      final String[] parts = line.trim().split("\t");
      checkArgument(parts.length == 5, "expected five columns, but got " + parts.length);
      final Symbol queryID = Symbol.from(parts[0]);
      final Symbol docID = Symbol.from(parts[1]);
      final String[] systemIDs = parts[2].split(",");
      final ImmutableSortedSet<CharOffsetSpan> spans = extractPJSpans(parts[3]);
      final QueryAssessment2016 assessment = QueryAssessment2016.valueOf(parts[4]);
      final QueryResponse2016 query =
          QueryResponse2016.builder().queryID(queryID).docID(docID)
              .addAllPredicateJustifications(spans).build();
      queries.add(query);
      for(final String systemID: systemIDs) {
        responsesToSystems.put(query, Symbol.from(systemID));
      }
      if (!assessment.equals(QueryAssessment2016.UNASSESSED)) {
        assessments.put(query, assessment);
      }
      if (lastMetadata.isPresent()) {
        metadata.put(query, lastMetadata.get());
        lastMetadata = Optional.absent();
      }
    }
  }
  return CorpusQueryAssessments.builder().addAllQueryReponses(queries).assessments(assessments)
      .queryResponsesToSystemIDs(responsesToSystems.build())
      .metadata(metadata).build();
}

项目：tac-kbp-eal 文件：SingleFileQueryAssessmentsLoader.java

private static ImmutableSortedSet<CharOffsetSpan> extractPJSpans(final String part) {
  final ImmutableSortedSet.Builder<CharOffsetSpan> spans = ImmutableSortedSet.naturalOrder();
  for (final String spanString : commaSplitter.split(part.trim())) {
    final List<String> spanParts = ImmutableList.copyOf(dashSplitter.split(spanString));
    checkState(spanParts.size() == 2,
        "Expected two components to the span, but got " + spanParts.size());
    final int start = Integer.parseInt(spanParts.get(0));
    final int end = Integer.parseInt(spanParts.get(1));
    spans.add(CharOffsetSpan.fromOffsetsOnly(start, end));
  }
  return spans.build();
}

项目：ontolib 文件：PrecomputingPairwiseResnikSimilarity.java

PrecomputedScores(Collection<TermId> termIds) {
  termIdCount = termIds.size();
  data = new float[termIdCount * termIdCount];
  termIdToIdx = new HashMap<>(termIdCount);

  int i = 0;
  for (TermId termId : ImmutableSortedSet.copyOf(termIds)) {
    termIdToIdx.put(termId, i++);
  }
}

项目：ontolib 文件：TermIdsTest.java

@Test
public void test() {
  Set<TermId> inputIds = Sets.newHashSet(id1);
  Set<TermId> outputIds =
      ImmutableSortedSet.copyOf(TermIds.augmentWithAncestors(ontology, inputIds, true));
  assertEquals(
      "[ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000001], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000002], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000003], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000004], ImmutableTermId [prefix=ImmutableTermPrefix [value=HP], id=0000005]]",
      outputIds.toString());
}