Java 类org.jfree.data.xy.AbstractXYZDataset 实例源码

@Override
@Nonnull
public ExitCode runModule(@Nonnull MZmineProject project,
        @Nonnull ParameterSet parameters, @Nonnull Collection<Task> tasks) {

    PeakList peakLists[] = parameters.getParameter(CVParameters.peakLists)
            .getValue().getMatchingPeakLists();

    for (PeakList pl : peakLists) {

        // Create dataset & paint scale
        AbstractXYZDataset dataset = new LogratioDataset(pl, parameters);
        InterpolatingLookupPaintScale paintScale = new InterpolatingLookupPaintScale();
        paintScale.add(-1.00, new Color(0, 255, 0));
        paintScale.add(0.00, new Color(0, 0, 0));
        paintScale.add(1.00, new Color(255, 0, 0));

        // Create & show window
        RTMZAnalyzerWindow window = new RTMZAnalyzerWindow(dataset, pl,
                paintScale);
        window.setVisible(true);

    }

    return ExitCode.OK;
}

public RTMZAnalyzerWindow(AbstractXYZDataset dataset, PeakList peakList,
    InterpolatingLookupPaintScale paintScale) {
super("");

toolbar = new RTMZToolbar(this);
add(toolbar, BorderLayout.EAST);

plot = new RTMZPlot(this, dataset, paintScale);
add(plot, BorderLayout.CENTER);

String title = peakList.getName();
title = title.concat(" : ");
title = title.concat(dataset.toString());
this.setTitle(title);

pack();

   }

@Override
@Nonnull
public ExitCode runModule(@Nonnull MZmineProject project,
        @Nonnull ParameterSet parameters, @Nonnull Collection<Task> tasks) {

    PeakList peakLists[] = parameters.getParameter(CVParameters.peakLists)
            .getValue().getMatchingPeakLists();

    for (PeakList pl : peakLists) {

        // Create dataset & paint scale
        AbstractXYZDataset dataset = new CVDataset(pl, parameters);
        InterpolatingLookupPaintScale paintScale = new InterpolatingLookupPaintScale();

        paintScale.add(0.00, new Color(0, 0, 0));
        paintScale.add(0.15, new Color(102, 255, 102));
        paintScale.add(0.30, new Color(51, 102, 255));
        paintScale.add(0.45, new Color(255, 0, 0));

        // Create & show window
        RTMZAnalyzerWindow window = new RTMZAnalyzerWindow(dataset, pl,
                paintScale);

        window.setVisible(true);

    }

    return ExitCode.OK;

}

public RTMZRenderer(AbstractXYZDataset dataset, PaintScale paintScale) {
super(false, true);
this.dataset = dataset;
this.paintScale = paintScale;
this.setSeriesShape(0, dataPointsShape);

setDrawSeriesLineAsPath(true);
   }

public RTMZPlot(RTMZAnalyzerWindow masterFrame, AbstractXYZDataset dataset,
    InterpolatingLookupPaintScale paintScale) {
super(null);

this.paintScale = paintScale;

chart = ChartFactory.createXYAreaChart("", "Retention time", "m/z",
    dataset, PlotOrientation.VERTICAL, false, false, false);
chart.setBackgroundPaint(Color.white);
setChart(chart);

// title

TextTitle chartTitle = chart.getTitle();
chartTitle.setMargin(5, 0, 0, 0);
chartTitle.setFont(titleFont);
chart.removeSubtitle(chartTitle);

// disable maximum size (we don't want scaling)
setMaximumDrawWidth(Integer.MAX_VALUE);
setMaximumDrawHeight(Integer.MAX_VALUE);

// set the plot properties
plot = chart.getXYPlot();
plot.setBackgroundPaint(Color.white);
plot.setAxisOffset(new RectangleInsets(5.0, 5.0, 5.0, 5.0));

// set grid properties
plot.setDomainGridlinePaint(gridColor);
plot.setRangeGridlinePaint(gridColor);

// set crosshair (selection) properties
plot.setDomainCrosshairVisible(true);
plot.setRangeCrosshairVisible(true);
plot.setDomainCrosshairPaint(crossHairColor);
plot.setRangeCrosshairPaint(crossHairColor);
plot.setDomainCrosshairStroke(crossHairStroke);
plot.setRangeCrosshairStroke(crossHairStroke);

NumberFormat rtFormat = MZmineCore.getConfiguration().getRTFormat();
NumberFormat mzFormat = MZmineCore.getConfiguration().getMZFormat();

// set the X axis (retention time) properties
NumberAxis xAxis = (NumberAxis) plot.getDomainAxis();
xAxis.setNumberFormatOverride(rtFormat);
xAxis.setUpperMargin(0.001);
xAxis.setLowerMargin(0.001);

// set the Y axis (intensity) properties
NumberAxis yAxis = (NumberAxis) plot.getRangeAxis();
yAxis.setAutoRangeIncludesZero(false);
yAxis.setNumberFormatOverride(mzFormat);

plot.setDataset(dataset);
spotRenderer = new RTMZRenderer(dataset, paintScale);
plot.setRenderer(spotRenderer);
spotRenderer.setDefaultToolTipGenerator(new RTMZToolTipGenerator());

// Add a paintScaleLegend to chart

paintScaleAxis = new NumberAxis("Logratio");
paintScaleAxis.setRange(paintScale.getLowerBound(),
    paintScale.getUpperBound());

paintScaleLegend = new PaintScaleLegend(paintScale, paintScaleAxis);
paintScaleLegend.setPosition(plot.getDomainAxisEdge());
paintScaleLegend.setMargin(5, 25, 5, 25);

chart.addSubtitle(paintScaleLegend);

   }