Java 类org.jfree.data.xy.CategoryTableXYDataset 实例源码

项目：parabuild-ci 文件：CategoryTableXYDatasetTests.java

/**
 * Confirm that the equals method can distinguish all the required fields.
 */
public void testEquals() {

    CategoryTableXYDataset d1 = new CategoryTableXYDataset();
    d1.add(1.0, 1.1, "Series 1");
    d1.add(2.0, 2.2, "Series 1");

    CategoryTableXYDataset d2 = new CategoryTableXYDataset();
    d2.add(1.0, 1.1, "Series 1");
    d2.add(2.0, 2.2, "Series 1");

    assertTrue(d1.equals(d2));
    assertTrue(d2.equals(d1));

    d1.add(3.0, 3.3, "Series 1");
    assertFalse(d1.equals(d2));

    d2.add(3.0, 3.3, "Series 1");
    assertTrue(d1.equals(d2));

}

项目：hmftools 文件：CopyNumberCharts.java

@NotNull
static JFreeChart minorAllelePDF(@NotNull final List<PurpleCopyNumber> variants) {
    final CategoryTableXYDataset dataset = minorAllele(variants);
    final JFreeChart chart =
            ChartFactory.createXYBarChart("Minor Allele Ploidy PDF", "Ploidy", false, "BAF Count", dataset, PlotOrientation.VERTICAL,
                    true, false, false);

    StackedXYBarRenderer renderer = new StackedXYBarRenderer();
    renderer.setBarPainter(new StandardXYBarPainter());
    renderer.setShadowVisible(false);

    XYPlot xyPlot = (XYPlot) chart.getPlot();
    xyPlot.setRenderer(renderer);
    xyPlot.getDomainAxis().setRange(-1.1, 5.1);

    for (int i = 0; i < dataset.getSeriesCount(); i++) {
        renderer.setSeriesPaint(i, copyNumberColor(String.valueOf(dataset.getSeriesKey(i))));
    }
    return chart;
}

项目：hmftools 文件：CopyNumberCharts.java

@NotNull
static JFreeChart somaticPloidyPDF(@NotNull final List<PurityAdjustedSomaticVariant> variants) {
    final CategoryTableXYDataset dataset = variants(variants);
    final JFreeChart chart =
            ChartFactory.createXYBarChart("Somatic Variant Ploidy PDF", "Ploidy", false, "Count", dataset, PlotOrientation.VERTICAL,
                    true, false, false);

    StackedXYBarRenderer renderer = new StackedXYBarRenderer();
    renderer.setBarPainter(new StandardXYBarPainter());
    renderer.setShadowVisible(false);
    XYPlot xyPlot = (XYPlot) chart.getPlot();
    xyPlot.setRenderer(renderer);

    for (int i = 0; i < dataset.getSeriesCount(); i++) {
        renderer.setSeriesPaint(i, copyNumberColor(String.valueOf(dataset.getSeriesKey(i))));
    }
    return chart;
}

项目：nabs 文件：CategoryTableXYDatasetTests.java

/**
 * Confirm that the equals method can distinguish all the required fields.
 */
public void testEquals() {

    CategoryTableXYDataset d1 = new CategoryTableXYDataset();
    d1.add(1.0, 1.1, "Series 1");
    d1.add(2.0, 2.2, "Series 1");

    CategoryTableXYDataset d2 = new CategoryTableXYDataset();
    d2.add(1.0, 1.1, "Series 1");
    d2.add(2.0, 2.2, "Series 1");

    assertTrue(d1.equals(d2));
    assertTrue(d2.equals(d1));

    d1.add(3.0, 3.3, "Series 1");
    assertFalse(d1.equals(d2));

    d2.add(3.0, 3.3, "Series 1");
    assertTrue(d1.equals(d2));

}

项目：astor 文件：CategoryTableXYDatasetTests.java

/**
 * Confirm that the equals method can distinguish all the required fields.
 */
public void testEquals() {

    CategoryTableXYDataset d1 = new CategoryTableXYDataset();
    d1.add(1.0, 1.1, "Series 1");
    d1.add(2.0, 2.2, "Series 1");

    CategoryTableXYDataset d2 = new CategoryTableXYDataset();
    d2.add(1.0, 1.1, "Series 1");
    d2.add(2.0, 2.2, "Series 1");

    assertTrue(d1.equals(d2));
    assertTrue(d2.equals(d1));

    d1.add(3.0, 3.3, "Series 1");
    assertFalse(d1.equals(d2));

    d2.add(3.0, 3.3, "Series 1");
    assertTrue(d1.equals(d2));

}

项目：parabuild-ci 文件：CategoryTableXYDatasetTests.java

/**
 * This is a test for bug 1312066 - adding a new series should trigger a
 * recalculation of the interval width, if it is being automatically
 * calculated.
 */
public void testAddSeries() {
    CategoryTableXYDataset d1 = new CategoryTableXYDataset();
    d1.setAutoWidth(true);
    d1.add(3.0, 1.1, "Series 1");
    d1.add(7.0, 2.2, "Series 1");
    assertEquals(3.0, d1.getXValue(0, 0), EPSILON);
    assertEquals(7.0, d1.getXValue(0, 1), EPSILON);
    assertEquals(1.0, d1.getStartXValue(0, 0), EPSILON);
    assertEquals(5.0, d1.getStartXValue(0, 1), EPSILON);
    assertEquals(5.0, d1.getEndXValue(0, 0), EPSILON);
    assertEquals(9.0, d1.getEndXValue(0, 1), EPSILON);

    // now add some more data
    d1.add(7.5, 1.1, "Series 2");
    d1.add(9.0, 2.2, "Series 2");

    assertEquals(3.0, d1.getXValue(1, 0), EPSILON);
    assertEquals(7.0, d1.getXValue(1, 1), EPSILON);
    assertEquals(7.5, d1.getXValue(1, 2), EPSILON);
    assertEquals(9.0, d1.getXValue(1, 3), EPSILON);

    assertEquals(7.25, d1.getStartXValue(1, 2), EPSILON);
    assertEquals(8.75, d1.getStartXValue(1, 3), EPSILON);
    assertEquals(7.75, d1.getEndXValue(1, 2), EPSILON);
    assertEquals(9.25, d1.getEndXValue(1, 3), EPSILON);

    // and check the first series too...
    assertEquals(2.75, d1.getStartXValue(0, 0), EPSILON);
    assertEquals(6.75, d1.getStartXValue(0, 1), EPSILON);
    assertEquals(3.25, d1.getEndXValue(0, 0), EPSILON);
    assertEquals(7.25, d1.getEndXValue(0, 1), EPSILON);
}

项目：hmftools 文件：CopyNumberCharts.java

@VisibleForTesting
@NotNull
static CategoryTableXYDataset minorAllele(@NotNull final List<PurpleCopyNumber> copyNumbers) {
    int positivePloidy = 5;
    int positiveBuckets = positivePloidy * 10;
    int negativePloidy = 1;
    int negativeBuckets = negativePloidy * 10;
    int totalBuckets = negativeBuckets + positiveBuckets;

    double[][] buckets = new double[MAX_COPY_NUMBER_SERIES + 1][totalBuckets + 1];
    for (final PurpleCopyNumber copyNumber : copyNumbers) {

        double unboundMinorAllele = (1 - copyNumber.averageActualBAF()) * copyNumber.averageTumorCopyNumber();

        int series = limit(copyNumber.averageTumorCopyNumber(), 0, MAX_COPY_NUMBER_SERIES);
        int column = limit(unboundMinorAllele / 0.1, -negativeBuckets, positiveBuckets) + negativeBuckets;

        buckets[series][column] += copyNumber.bafCount();
    }

    CategoryTableXYDataset result = new CategoryTableXYDataset();
    for (int i = 0; i <= MAX_COPY_NUMBER_SERIES; i++) {
        String seriesName = "CN" + i + (i == MAX_COPY_NUMBER_SERIES ? "+" : "");

        for (int j = 0; j <= totalBuckets; j++) {
            if (!Doubles.isZero(buckets[i][j])) {
                result.add(-1 + (j * 0.1), buckets[i][j], seriesName);
            }
        }
    }

    return result;
}

项目：hmftools 文件：CopyNumberChartsTest.java

@Test
public void testNegativeMinorBafs() {
    CategoryTableXYDataset dataset = minorAllele(newArrayList(createCopyNumber(1.1, 1)));
    assertEquals(-0.1, dataset.getX(0, 0).doubleValue(), EPSILON);
    assertEquals(10, dataset.getY(0, 0).doubleValue(), EPSILON);

    dataset = minorAllele(newArrayList(createCopyNumber(1.7, 1)));
    assertEquals(-0.7, dataset.getX(0, 0).doubleValue(), EPSILON);
    assertEquals(10, dataset.getY(0, 0).doubleValue(), EPSILON);
}

项目：hmftools 文件：CopyNumberChartsTest.java

@Test
public void testLowerBoundary() {
    CategoryTableXYDataset dataset = minorAllele(newArrayList(createCopyNumber(2, 1)));
    assertEquals(-1, dataset.getX(0, 0).doubleValue(), EPSILON);
    assertEquals(10, dataset.getY(0, 0).doubleValue(), EPSILON);

    dataset = minorAllele(newArrayList(createCopyNumber(3, 1)));
    assertEquals(-1, dataset.getX(0, 0).doubleValue(), EPSILON);
    assertEquals(10, dataset.getY(0, 0).doubleValue(), EPSILON);
}

项目：hmftools 文件：CopyNumberChartsTest.java

@Test
public void testUpperBoundary() {
    CategoryTableXYDataset dataset = minorAllele(newArrayList(createCopyNumber(0, 5)));
    assertEquals(5, dataset.getX(0, 0).doubleValue(), EPSILON);
    assertEquals(10, dataset.getY(0, 0).doubleValue(), EPSILON);

    dataset = minorAllele(newArrayList(createCopyNumber(0, 6)));
    assertEquals(5, dataset.getX(0, 0).doubleValue(), EPSILON);
    assertEquals(10, dataset.getY(0, 0).doubleValue(), EPSILON);
}

项目：groovychart 文件：CategoryTableXYDatasetBuilder.java

public void processNode(Object name, Map map, Object value) throws Exception {
    if(value != null && value instanceof CategoryTableXYDataset) {
        this.xyDataset = (CategoryTableXYDataset)value;
    }else {
        // TODO
    }             
}

项目：nabs 文件：CategoryTableXYDatasetTests.java

/**
 * This is a test for bug 1312066 - adding a new series should trigger a
 * recalculation of the interval width, if it is being automatically
 * calculated.
 */
public void testAddSeries() {
    CategoryTableXYDataset d1 = new CategoryTableXYDataset();
    d1.setAutoWidth(true);
    d1.add(3.0, 1.1, "Series 1");
    d1.add(7.0, 2.2, "Series 1");
    assertEquals(3.0, d1.getXValue(0, 0), EPSILON);
    assertEquals(7.0, d1.getXValue(0, 1), EPSILON);
    assertEquals(1.0, d1.getStartXValue(0, 0), EPSILON);
    assertEquals(5.0, d1.getStartXValue(0, 1), EPSILON);
    assertEquals(5.0, d1.getEndXValue(0, 0), EPSILON);
    assertEquals(9.0, d1.getEndXValue(0, 1), EPSILON);

    // now add some more data
    d1.add(7.5, 1.1, "Series 2");
    d1.add(9.0, 2.2, "Series 2");

    assertEquals(3.0, d1.getXValue(1, 0), EPSILON);
    assertEquals(7.0, d1.getXValue(1, 1), EPSILON);
    assertEquals(7.5, d1.getXValue(1, 2), EPSILON);
    assertEquals(9.0, d1.getXValue(1, 3), EPSILON);

    assertEquals(7.25, d1.getStartXValue(1, 2), EPSILON);
    assertEquals(8.75, d1.getStartXValue(1, 3), EPSILON);
    assertEquals(7.75, d1.getEndXValue(1, 2), EPSILON);
    assertEquals(9.25, d1.getEndXValue(1, 3), EPSILON);

    // and check the first series too...
    assertEquals(2.75, d1.getStartXValue(0, 0), EPSILON);
    assertEquals(6.75, d1.getStartXValue(0, 1), EPSILON);
    assertEquals(3.25, d1.getEndXValue(0, 0), EPSILON);
    assertEquals(7.25, d1.getEndXValue(0, 1), EPSILON);
}

项目：astor 文件：CategoryTableXYDatasetTests.java

/**
 * This is a test for bug 1312066 - adding a new series should trigger a
 * recalculation of the interval width, if it is being automatically
 * calculated.
 */
public void testAddSeries() {
    CategoryTableXYDataset d1 = new CategoryTableXYDataset();
    d1.setAutoWidth(true);
    d1.add(3.0, 1.1, "Series 1");
    d1.add(7.0, 2.2, "Series 1");
    assertEquals(3.0, d1.getXValue(0, 0), EPSILON);
    assertEquals(7.0, d1.getXValue(0, 1), EPSILON);
    assertEquals(1.0, d1.getStartXValue(0, 0), EPSILON);
    assertEquals(5.0, d1.getStartXValue(0, 1), EPSILON);
    assertEquals(5.0, d1.getEndXValue(0, 0), EPSILON);
    assertEquals(9.0, d1.getEndXValue(0, 1), EPSILON);

    // now add some more data
    d1.add(7.5, 1.1, "Series 2");
    d1.add(9.0, 2.2, "Series 2");

    assertEquals(3.0, d1.getXValue(1, 0), EPSILON);
    assertEquals(7.0, d1.getXValue(1, 1), EPSILON);
    assertEquals(7.5, d1.getXValue(1, 2), EPSILON);
    assertEquals(9.0, d1.getXValue(1, 3), EPSILON);

    assertEquals(7.25, d1.getStartXValue(1, 2), EPSILON);
    assertEquals(8.75, d1.getStartXValue(1, 3), EPSILON);
    assertEquals(7.75, d1.getEndXValue(1, 2), EPSILON);
    assertEquals(9.25, d1.getEndXValue(1, 3), EPSILON);

    // and check the first series too...
    assertEquals(2.75, d1.getStartXValue(0, 0), EPSILON);
    assertEquals(6.75, d1.getStartXValue(0, 1), EPSILON);
    assertEquals(3.25, d1.getEndXValue(0, 0), EPSILON);
    assertEquals(7.25, d1.getEndXValue(0, 1), EPSILON);
}

项目：astor 文件：CategoryTableXYDatasetTests.java

/**
 * Verify that this class implements {@link PublicCloneable}.
 */
public void testPublicCloneable() {
    CategoryTableXYDataset d1 = new CategoryTableXYDataset();
    assertTrue(d1 instanceof PublicCloneable);
}

项目：groovychart 文件：CategoryTableXYDatasetBuilder.java

/**
 * Getter for property xyDataset.
 * @return Value of property xyDataset.
 */
public CategoryTableXYDataset getXyDataset() {
    return this.xyDataset;
}

项目：groovychart 文件：CategoryTableXYDatasetBuilder.java

/**
 * Setter for property xyDataset.
 * @param xyDataset New value of property xyDataset.
 */
public void setXyDataset(CategoryTableXYDataset xyDataset) {
    this.xyDataset = xyDataset;
}