/** * Create a detached, initialised ProteinFeatureRecord */ public ProteinFeatureRecord(UInteger proteinFeatureId, UInteger translationId, Integer seqStart, Integer seqEnd, Integer hitStart, Integer hitEnd, String hitName, UShort analysisId, Double score, Double evalue, Double percIdent, String externalData, String hitDescription) { super(ProteinFeature.PROTEIN_FEATURE); set(0, proteinFeatureId); set(1, translationId); set(2, seqStart); set(3, seqEnd); set(4, hitStart); set(5, hitEnd); set(6, hitName); set(7, analysisId); set(8, score); set(9, evalue); set(10, percIdent); set(11, externalData); set(12, hitDescription); }
/** * {@inheritDoc} */ @Override public ProteinAlignFeatureRecord values(UInteger value1, UInteger value2, UInteger value3, UInteger value4, Byte value5, Integer value6, Integer value7, String value8, UShort value9, Double value10, Double value11, Double value12, String value13, UInteger value14, Double value15) { value1(value1); value2(value2); value3(value3); value4(value4); value5(value5); value6(value6); value7(value7); value8(value8); value9(value9); value10(value10); value11(value11); value12(value12); value13(value13); value14(value14); value15(value15); return this; }
/** * {@inheritDoc} */ @Override public DitagFeatureRecord values(UInteger value1, UInteger value2, UInteger value3, UInteger value4, UInteger value5, UInteger value6, Byte value7, UShort value8, UInteger value9, UInteger value10, Byte value11, String value12, DitagFeatureDitagSide value13) { value1(value1); value2(value2); value3(value3); value4(value4); value5(value5); value6(value6); value7(value7); value8(value8); value9(value9); value10(value10); value11(value11); value12(value12); value13(value13); return this; }
/** * Create a detached, initialised DnaAlignFeatureRecord */ public DnaAlignFeatureRecord(UInteger dnaAlignFeatureId, UInteger seqRegionId, UInteger seqRegionStart, UInteger seqRegionEnd, Byte seqRegionStrand, Integer hitStart, Integer hitEnd, Byte hitStrand, String hitName, UShort analysisId, Double score, Double evalue, Double percIdent, String cigarLine, UInteger externalDbId, Double hcoverage, String externalData) { super(DnaAlignFeature.DNA_ALIGN_FEATURE); set(0, dnaAlignFeatureId); set(1, seqRegionId); set(2, seqRegionStart); set(3, seqRegionEnd); set(4, seqRegionStrand); set(5, hitStart); set(6, hitEnd); set(7, hitStrand); set(8, hitName); set(9, analysisId); set(10, score); set(11, evalue); set(12, percIdent); set(13, cigarLine); set(14, externalDbId); set(15, hcoverage); set(16, externalData); }
/** * {@inheritDoc} */ @Override public TranscriptRecord values(UInteger value1, UInteger value2, UShort value3, UInteger value4, UInteger value5, UInteger value6, Byte value7, UInteger value8, String value9, String value10, TranscriptStatus value11, String value12, Byte value13, UInteger value14, String value15, UShort value16, Timestamp value17, Timestamp value18) { value1(value1); value2(value2); value3(value3); value4(value4); value5(value5); value6(value6); value7(value7); value8(value8); value9(value9); value10(value10); value11(value11); value12(value12); value13(value13); value14(value14); value15(value15); value16(value16); value17(value17); value18(value18); return this; }
/** * {@inheritDoc} */ @Override public DnaAlignFeatureRecord values(UInteger value1, UInteger value2, UInteger value3, UInteger value4, Byte value5, Integer value6, Integer value7, Byte value8, String value9, UShort value10, Double value11, Double value12, Double value13, String value14, UInteger value15, Double value16, String value17) { value1(value1); value2(value2); value3(value3); value4(value4); value5(value5); value6(value6); value7(value7); value8(value8); value9(value9); value10(value10); value11(value11); value12(value12); value13(value13); value14(value14); value15(value15); value16(value16); value17(value17); return this; }
/** * {@inheritDoc} */ @Override public OperonTranscriptRecord values(UInteger value1, UInteger value2, UInteger value3, UInteger value4, Byte value5, UInteger value6, String value7, UShort value8, String value9, UShort value10, Timestamp value11, Timestamp value12) { value1(value1); value2(value2); value3(value3); value4(value4); value5(value5); value6(value6); value7(value7); value8(value8); value9(value9); value10(value10); value11(value11); value12(value12); return this; }
/** * Create a detached, initialised DitagFeatureRecord */ public DitagFeatureRecord(UInteger ditagFeatureId, UInteger ditagId, UInteger ditagPairId, UInteger seqRegionId, UInteger seqRegionStart, UInteger seqRegionEnd, Byte seqRegionStrand, UShort analysisId, UInteger hitStart, UInteger hitEnd, Byte hitStrand, String cigarLine, DitagFeatureDitagSide ditagSide) { super(DitagFeature.DITAG_FEATURE); set(0, ditagFeatureId); set(1, ditagId); set(2, ditagPairId); set(3, seqRegionId); set(4, seqRegionStart); set(5, seqRegionEnd); set(6, seqRegionStrand); set(7, analysisId); set(8, hitStart); set(9, hitEnd); set(10, hitStrand); set(11, cigarLine); set(12, ditagSide); }
/** * Create a detached, initialised DensityTypeRecord */ public DensityTypeRecord(UInteger densityTypeId, UShort analysisId, Integer blockSize, Integer regionFeatures, DensityTypeValueType valueType) { super(DensityType.DENSITY_TYPE); set(0, densityTypeId); set(1, analysisId); set(2, blockSize); set(3, regionFeatures); set(4, valueType); }
/** * {@inheritDoc} */ @Override public AttribTypeRecord values(UShort value1, String value2, String value3, String value4) { value1(value1); value2(value2); value3(value3); value4(value4); return this; }
/** * {@inheritDoc} */ @Override public MiscFeatureMiscSetRecord values(UInteger value1, UShort value2) { value1(value1); value2(value2); return this; }
/** * {@inheritDoc} */ @Override public TranscriptAttribRecord values(UInteger value1, UShort value2, String value3) { value1(value1); value2(value2); value3(value3); return this; }
/** * Create a detached, initialised MiscFeatureMiscSetRecord */ public MiscFeatureMiscSetRecord(UInteger miscFeatureId, UShort miscSetId) { super(MiscFeatureMiscSet.MISC_FEATURE_MISC_SET); set(0, miscFeatureId); set(1, miscSetId); }
/** * {@inheritDoc} */ @Override public PredictionTranscriptRecord values(UInteger value1, UInteger value2, UInteger value3, UInteger value4, Byte value5, UShort value6, String value7) { value1(value1); value2(value2); value3(value3); value4(value4); value5(value5); value6(value6); value7(value7); return this; }
/** * {@inheritDoc} */ @Override public TranslationRecord values(UInteger value1, UInteger value2, Integer value3, UInteger value4, Integer value5, UInteger value6, String value7, UShort value8, Timestamp value9, Timestamp value10) { value1(value1); value2(value2); value3(value3); value4(value4); value5(value5); value6(value6); value7(value7); value8(value8); value9(value9); value10(value10); return this; }
/** * Create a detached, initialised DitagRecord */ public DitagRecord(UInteger ditagId, String name, String type, UShort tagCount, String sequence) { super(Ditag.DITAG); set(0, ditagId); set(1, name); set(2, type); set(3, tagCount); set(4, sequence); }
/** * {@inheritDoc} */ @Override public SeqRegionAttribRecord values(UInteger value1, UShort value2, String value3) { value1(value1); value2(value2); value3(value3); return this; }
/** * {@inheritDoc} */ @Override public Field<UShort> field2() { return TranscriptAttrib.TRANSCRIPT_ATTRIB.ATTRIB_TYPE_ID; }
/** * {@inheritDoc} */ @Override public Row14<UShort, Timestamp, String, String, String, String, String, String, String, String, String, String, String, String> fieldsRow() { return (Row14) super.fieldsRow(); }
/** * {@inheritDoc} */ @Override public Row14<UShort, Timestamp, String, String, String, String, String, String, String, String, String, String, String, String> valuesRow() { return (Row14) super.valuesRow(); }
/** * Getter for <code>homo_sapiens_core_89_37.attrib_type.attrib_type_id</code>. */ public UShort getAttribTypeId() { return (UShort) get(0); }
/** * {@inheritDoc} */ @Override public Row13<UInteger, UInteger, Integer, Integer, Integer, Integer, String, UShort, Double, Double, Double, String, String> fieldsRow() { return (Row13) super.fieldsRow(); }
/** * {@inheritDoc} */ @Override public SeqRegionAttribRecord value2(UShort value) { setAttribTypeId(value); return this; }
/** * {@inheritDoc} */ @Override public Field<UShort> field8() { return ProteinFeature.PROTEIN_FEATURE.ANALYSIS_ID; }
/** * Getter for <code>homo_sapiens_core_89_37.intron_supporting_evidence.analysis_id</code>. */ public UShort getAnalysisId() { return (UShort) get(1); }
/** * {@inheritDoc} */ @Override public ProteinFeatureRecord value8(UShort value) { setAnalysisId(value); return this; }
/** * Getter for <code>homo_sapiens_core_89_37.misc_attrib.attrib_type_id</code>. */ public UShort getAttribTypeId() { return (UShort) get(1); }
/** * {@inheritDoc} */ @Override public Field<UShort> field6() { return MarkerFeature.MARKER_FEATURE.ANALYSIS_ID; }
/** * Getter for <code>homo_sapiens_core_89_37.density_type.analysis_id</code>. */ public UShort getAnalysisId() { return (UShort) get(1); }
/** * {@inheritDoc} */ @Override public UnmappedObjectRecord value3(UShort value) { setAnalysisId(value); return this; }
/** * {@inheritDoc} */ @Override public Row5<UInteger, UShort, Integer, Integer, DensityTypeValueType> valuesRow() { return (Row5) super.valuesRow(); }
/** * {@inheritDoc} */ @Override public UShort value2() { return getAttribTypeId(); }
/** * {@inheritDoc} */ @Override public Field<UShort> field2() { return SeqRegionAttrib.SEQ_REGION_ATTRIB.ATTRIB_TYPE_ID; }
/** * {@inheritDoc} */ @Override public Record2<UInteger, UShort> key() { return (Record2) super.key(); }
/** * {@inheritDoc} */ @Override public OperonTranscriptRecord value8(UShort value) { setAnalysisId(value); return this; }
/** * Setter for <code>homo_sapiens_core_89_37.protein_align_feature.analysis_id</code>. */ public void setAnalysisId(UShort value) { set(8, value); }
/** * Setter for <code>homo_sapiens_core_89_37.operon_transcript.analysis_id</code>. */ public void setAnalysisId(UShort value) { set(7, value); }
/** * {@inheritDoc} */ @Override public Row15<UInteger, UInteger, UInteger, UInteger, Byte, Integer, Integer, String, UShort, Double, Double, Double, String, UInteger, Double> fieldsRow() { return (Row15) super.fieldsRow(); }
/** * {@inheritDoc} */ @Override public Row3<UInteger, UShort, String> valuesRow() { return (Row3) super.valuesRow(); }
/** * {@inheritDoc} */ @Override public Field<UShort> field16() { return Transcript.TRANSCRIPT.VERSION; }